Zero-filled Skipped Connection Network (ZSNET) for 2D Brain MRI Reconstruction
model2026-01-24https://doi.org/10.1148/atlas.1769273040145
102

Overview

Schema Version

https://atlas.rsna.org/schemas/2025-11/model.json

Name

Zero-filled Skipped Connection Network (ZSNET) for 2D Brain MRI Reconstruction

Link

https://pubs.rsna.org/doi/10.1148/ryai.210313

Indexing

Keywords: MRI Reconstruction, High Acceleration, Deep Learning, Screening, Out of Distribution, fastMRI, Variational Network, ZSNET, 2D brain MRI
Content: MR, NR
RadLex: RID10749, RID10795, RID35806, RID12695, RID10312, RID10744, RID12681, RID10741, RID12692

Author(s)

Alireza Radmanesh
Matthew J. Muckley
Tullie Murrell
Emma Lindsey
Anuroop Sriram
Florian Knoll
Daniel K. Sodickson
Yvonne W. Lui

Organization(s)

NYU School of Medicine–NYU Langone Health
Meta AI (Facebook)
Friedrich-Alexander Universität Erlangen-Nürnberg, Department Artificial Intelligence in Biomedical Engineering

Version

1.0

Contact

moc.atem@yelkcumm

Funding

National Institutes of Health (R01EB024532, P41EB017183).

Ethical review

Retrospective study with local IRB approval; informed consent waived due to minimal risk and use of de-identified data.

Date

Updated: 2022-11-02
Published: 2022-11-02

References

[1] Radmanesh A, Muckley MJ, Murrell T, Lindsey E, Sriram A, Knoll F, Sodickson DK, Lui YW. "Exploring the Acceleration Limits of Deep Learning Variational Network–based Two-dimensional Brain MRI". Radiology: Artificial Intelligence. 2022 Nov;4(6):e210313.. 2022-11-02. doi:10.1148/ryai.210313. PMID: 36523647. PMCID: PMC9745443.

Model

Architecture

Enlarged End-to-End Variational Network with 18 cascades; each cascade uses a residual U-Net (20 channels, five pooling layers) and a DenseNet-inspired skipped connection to the zero-filled reconstruction; coil sensitivities estimated using all k-space. Approx. 231M parameters. Single-direction phase-encode undersampling.

Availability

Open-source code available at https://github.com/facebookresearch/fastMRI

Clinical benefit

Substantially accelerates 2D brain MRI acquisition while preserving diagnostic image quality up to approximately 4× and enabling potential screening use up to approximately 14× in many cases, reducing scan times and improving patient comfort and throughput.

Clinical workflow phase

Clinical imaging acquisition/reconstruction and workflow optimization.

Degree of automation

Automatic image reconstruction from undersampled multi-coil k-space without user intervention.

Indications for use

Reconstruction of undersampled axial 2D fast spin-echo T1-weighted, T2-weighted, and T2 FLAIR brain MRI acquired on 1.5T and 3T Siemens scanners; general diagnostic imaging up to ~4× acceleration and potential screening up to ~14× based on radiologist evaluation.

Input

Raw multi-coil k-space from 2D spin-echo brain MRI undersampled along a single phase-encoding direction (accelerations trained at 2×–100×).

Instructions

Model trained for accelerations 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 24, 32, 48, 64, 100× using fastMRI brain training/validation splits; evaluate on held-out test set. For reader studies, low-level dithering noise was added before presentation.

Limitations

Single-institution, single-vendor dataset (Siemens); limited sequences (2D FSE T1, T2, T2 FLAIR) and section thickness (3–5 mm); retrospective undersampling; quantitative metrics (SSIM/PSNR) do not fully distinguish screening vs diagnostic thresholds; pseudonormalization, blurring, and potential hallucinations at high accelerations; out-of-distribution performance degrades (e.g., knees).

Output

Description: Reconstructed magnitude brain MR images from undersampled k-space across specified acceleration factors.

Recommendation

For general-purpose diagnostic imaging use up to approximately 4× acceleration; for potential screening, many cases acceptable up to approximately 14×; higher accelerations may risk pseudonormalization and loss of subtle findings.

Reproducibility

Uses publicly available fastMRI dataset with standard train/validation/test splits; code available; evaluation with bootstrap CIs and detailed supplemental methods.

Use

Intended: Image reconstruction
Out-of-scope: Noise reduction